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27
OnRunning.md
27
OnRunning.md
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# Running Experiments with Lambda:
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This is not supposed to be a instruction on how to do it properly, but it is a writeup on how i did it.
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If you want to do it properly, extend the command line Arguments for haga-lambda and allow runtime tweaking of Hyperparams and Datasets. While at it, generalizing LamdaCalculusV1 would be smart, too. You can use LamdaCalculusV2 as a template on how to do it more properly. (I wrote that later, and was IMO quite a bit smarter about it. I sadly didn't have time to fix up V1...)
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You just want to do the same hack i did or know about it?
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create a branch for each Dataset-experiment pair. e.g. iris_1 ... iris_9
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here git is your friend, especially if you inevitably screw up.
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e.g. echo git\ checkout\ iris_{1..9}\;\ git\ cherry-pick\ 7ced1e1\; will create a command for applying the commit 7ced1e1 to every iris branch.
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Adapt the build.sbatch and run.sbatch and **commit them**!
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clone the branch you committed to on the cluster.
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create the required folders! If you forget the output one, slurm will fail silently!
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Make sure to sbatch an adapted **build.sbatch before run.sbatch**!
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build.sbatch will need to be adapted for and run on every node you will use!
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Otherwise stuff WILL break!
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sbatch run.sbatch
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You can use squeue to monitor progress.
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A huge slew of raw data will be dumped into the output Folder. The error files contain results, the output files stats during training.
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On how to process these results, see: https://merl.dnshome.de/git/Hans/haga-graphics
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29
build.sbatch
29
build.sbatch
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#!/usr/bin/env bash
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#!/usr/bin/env bash
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#SBATCH --time=00:10:00
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#SBATCH --time=00:10:00
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#SBATCH --partition=cpu
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#SBATCH --partition=cpu
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# 9 Experiments * 3 Datasets
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#SBATCH --output=./output/output_build.txt
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#SBATCH --array=0-27
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#SBATCH --error=./output/error_build.txt
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# ensure output exists, is a folder and is writable in your working directory
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#SBATCH --output=./output/output_run_%a.txt
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#SBATCH --error=./output/error_run_%a.txt
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# run once for every node you plan to use
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#SBATCH --nodelist=oc-compute02
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#SBATCH --nodelist=oc-compute02
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#SBATCH --mem=2G
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#SBATCH --mem=4G
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#SBATCH -c16
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srun nix develop --command stack --no-nix --system-ghc --no-install-ghc build
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# list your branches
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problems=("iris" "nurse" "german")
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#9 Experiments
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current_problem=${problems[(${SLURM_ARRAY_TASK_ID}/9)]}
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#9 Experiments
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current_variant=$(((${SLURM_ARRAY_TASK_ID}) % 9 + 1))
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current_branch="${current_problem}_${current_variant}"
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# ensure [full path to writable folder on node *] exists
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git clone -b $current_branch --single-branch "[your git repo]" [full path to writable folder on node 1]/$current_branch
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git clone -b $current_branch --single-branch "[your git repo]" [full path to writable folder on node 1]/$current_branch
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#... for every node
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srun bash -c "cd /data/$SLURMD_NODENAME/merljoha/$current_branch; nix develop --command stack --no-nix --system-ghc --no-install-ghc build"
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@@ -86,13 +86,13 @@ lE =
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((Ref.SomeTypeRep (Ref.TypeRep @(Job))), [(fmap show (enumUniform UnemployedOrUnskilledNonResident HighlySkilled ))])
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((Ref.SomeTypeRep (Ref.TypeRep @(Job))), [(fmap show (enumUniform UnemployedOrUnskilledNonResident HighlySkilled ))])
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],
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],
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targetType = (Ref.SomeTypeRep (Ref.TypeRep @(AccountStatus -> Int -> CreditHistory -> Purpose -> Int -> Savings -> EmploymentStatus -> Int -> StatusAndSex -> OtherDebtors -> Int -> Property -> Int -> OtherPlans -> Housing -> Int -> Job -> Int -> Bool -> Bool -> GermanClass))),
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targetType = (Ref.SomeTypeRep (Ref.TypeRep @(AccountStatus -> Int -> CreditHistory -> Purpose -> Int -> Savings -> EmploymentStatus -> Int -> StatusAndSex -> OtherDebtors -> Int -> Property -> Int -> OtherPlans -> Housing -> Int -> Job -> Int -> Bool -> Bool -> GermanClass))),
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maxDepth = 9,
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maxDepth = 8,
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weights =
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weights =
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ExpressionWeights
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ExpressionWeights
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{ lambdaSpucker = 0,
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{ lambdaSpucker = 10,
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lambdaSchlucker = 10,
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lambdaSchlucker = 1,
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symbol = 100,
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symbol = 20,
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variable = 5,
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variable = 100,
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constant = 5
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constant = 5
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}
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}
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}
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}
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@@ -53,13 +53,13 @@ lE =
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((Ref.SomeTypeRep (Ref.TypeRep @(IrisClass))), [(fmap show (enumUniform Setosa Versicolor :: RVar IrisClass))])
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((Ref.SomeTypeRep (Ref.TypeRep @(IrisClass))), [(fmap show (enumUniform Setosa Versicolor :: RVar IrisClass))])
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],
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],
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targetType = (Ref.SomeTypeRep (Ref.TypeRep @(Float -> Float -> Float -> Float -> IrisClass))),
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targetType = (Ref.SomeTypeRep (Ref.TypeRep @(Float -> Float -> Float -> Float -> IrisClass))),
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maxDepth = 9,
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maxDepth = 8,
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weights =
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weights =
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ExpressionWeights
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ExpressionWeights
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{ lambdaSpucker = 0,
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{ lambdaSpucker = 10,
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lambdaSchlucker = 10,
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lambdaSchlucker = 1,
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symbol = 100,
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symbol = 20,
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variable = 5,
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variable = 100,
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constant = 5
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constant = 5
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}
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}
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}
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}
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@@ -68,7 +68,7 @@ lEE :: LamdaExecutionEnv
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lEE =
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lEE =
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LamdaExecutionEnv
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LamdaExecutionEnv
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{ -- For now these need to define all available functions and types. Generic functions can be used.
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{ -- For now these need to define all available functions and types. Generic functions can be used.
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imports = ["LambdaDatasets.IrisDefinition"],
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imports = ["LambdaDatasets.IrisDataset"],
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training = True,
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training = True,
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trainingData =
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trainingData =
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( map fst (takeFraktion 0.8 irisTrainingData),
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( map fst (takeFraktion 0.8 irisTrainingData),
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@@ -89,7 +89,7 @@ shuffledLEE = do
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itD <- smpl $ shuffle irisTrainingData
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itD <- smpl $ shuffle irisTrainingData
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return LamdaExecutionEnv
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return LamdaExecutionEnv
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{ -- For now these need to define all available functions and types. Generic functions can be used.
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{ -- For now these need to define all available functions and types. Generic functions can be used.
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imports = ["LambdaDatasets.IrisDefinition"],
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imports = ["LambdaDatasets.IrisDataset"],
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training = True,
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training = True,
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trainingData =
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trainingData =
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( map fst (takeFraktion 0.8 itD),
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( map fst (takeFraktion 0.8 itD),
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@@ -74,13 +74,13 @@ lE =
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((Ref.SomeTypeRep (Ref.TypeRep @(Health))), [(fmap show (enumUniform NotRecommendHealth PriorityHealth ))])
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((Ref.SomeTypeRep (Ref.TypeRep @(Health))), [(fmap show (enumUniform NotRecommendHealth PriorityHealth ))])
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],
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],
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targetType = (Ref.SomeTypeRep (Ref.TypeRep @(Parents -> HasNurs -> Form -> Children -> Housing -> Finance -> Social -> Health -> NurseryClass))),
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targetType = (Ref.SomeTypeRep (Ref.TypeRep @(Parents -> HasNurs -> Form -> Children -> Housing -> Finance -> Social -> Health -> NurseryClass))),
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maxDepth = 9,
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maxDepth = 8,
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weights =
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weights =
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ExpressionWeights
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ExpressionWeights
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{ lambdaSpucker = 0,
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{ lambdaSpucker = 10,
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lambdaSchlucker = 10,
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lambdaSchlucker = 1,
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symbol = 100,
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symbol = 20,
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variable = 5,
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variable = 100,
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constant = 5
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constant = 5
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}
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}
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}
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}
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@@ -35,7 +35,7 @@ options =
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( long "population-size"
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( long "population-size"
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<> short 'p'
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<> short 'p'
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<> metavar "N"
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<> metavar "N"
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<> value 100
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<> value 400
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<> help "Population size"
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<> help "Population size"
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)
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)
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@@ -59,7 +59,7 @@ main =
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selectionType = Tournament 3,
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selectionType = Tournament 3,
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termination = (steps (iterations opts)),
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termination = (steps (iterations opts)),
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poulationSize = (populationSize opts),
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poulationSize = (populationSize opts),
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stepSize = 90,
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stepSize = 120,
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elitismRatio = 5/100
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elitismRatio = 5/100
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}
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}
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pop' <- runEffect (for (run cfg) logCsv)
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pop' <- runEffect (for (run cfg) logCsv)
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36
run.sbatch
36
run.sbatch
@@ -1,31 +1,9 @@
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#!/usr/bin/env bash
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#!/usr/bin/env bash
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# test this timing, it scales with result sizes
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#SBATCH --time=18:00:00
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#SBATCH --time=12:00:00
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#SBATCH --partition=cpu
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#SBATCH --partition=cpu
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# 30 Runs * 9 Experiments * 3 Datasets
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#SBATCH --array=0-30
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#SBATCH --array=0-809
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#SBATCH --output=./output/output_run_%j.txt
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# ensure output exists, is a folder and is writable in your working directory
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#SBATCH --error=./output/error_run_%j.txt
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#SBATCH --output=./output/output_run_%a.txt
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#SBATCH --nodelist=oc-compute02
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#SBATCH --error=./output/error_run_%a.txt
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#SBATCH --mem=3G
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# exclude nodes with weaker CPUs
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srun nix develop --command stack --no-nix --system-ghc --no-install-ghc run haga-lambda
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#SBATCH --exclude=oc222
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# test memory usage, it scales **Exponentially** with max Depth. Implement some countermeasures if that's a problem, e.g. raise max depth over time.
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#SBATCH --mem=6G
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#SBATCH --nodes=1
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# list your branches
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problems=("iris" "nurse" "german")
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# 30 Runs * 9 Experiments
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current_problem=${problems[(${SLURM_ARRAY_TASK_ID}/270)]}
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# 30 Runs, 9 Experiments
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current_variant=$(((${SLURM_ARRAY_TASK_ID} / 30) % 9 + 1))
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current_branch="${current_problem}_${current_variant}"
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# ensure [full path to writable folder on node *] exists
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git clone -b $current_branch --single-branch "[your git repo]" [full path to writable folder on node 1]/$current_branch
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git clone -b $current_branch --single-branch "[your git repo]" [full path to writable folder on node 2]/$current_branch
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#... for every node
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srun bash -c "cd /data/$SLURMD_NODENAME/merljoha/$current_branch; nix develop --command stack --no-nix --system-ghc --no-install-ghc run haga-lambda"
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